Schnell, Santiago: search on Z-Library

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1

How Reaction Kinetics with Time-Dependent Rate Coefficients Differs from Generalized Mass Action

Ramon Grima, Santiago Schnell

Journal:

Year:

2006

Language:

english

File:

PDF, 62 KB

english, 2006

2

Multiscale Modeling in Biology: New insights into cancer illustrate how mathematical tools are enhancing the understanding of life from the smallest scale to the grandest

Santiago Schnell, Ramon Grima and Philip K. Maini

Journal:

American Scientist

Year:

2007

Language:

english

File:

PDF, 2.89 MB

english, 2007

3

The Quasi-State-State Approximations revisited: Timescales, small parameters, singularities, and normal forms in enzyme kinetics

Eilertsen, Justin, Schnell, Santiago

Journal:

Mathematical Biosciences

Year:

2020

Language:

english

File:

PDF, 1.33 MB

english, 2020

4

On the origin of non-membrane-bound organelles, and their physiological function

Stroberg, Wylie, Schnell, Santiago

Journal:

Journal of Theoretical Biology

Year:

2017

Language:

english

File:

PDF, 5.58 MB

english, 2017

5

Unraveling intestinal stem cell behavior with models of crypt dynamics

Carulli, Alexis J., Samuelson, Linda C., Schnell, Santiago

Journal:

Integrative Biology

Year:

2014

Language:

english

File:

PDF, 3.83 MB

english, 2014

6

On the estimation errors of KM and V from time-course experiments using the Michaelis–Menten equation

Stroberg, Wylie, Schnell, Santiago

Journal:

Biophysical Chemistry

Year:

2016

Language:

english

File:

PDF, 774 KB

english, 2016

7

Network motifs provide signatures that characterize metabolism

Shellman, Erin R., Burant, Charles F., Schnell, Santiago

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 6.49 MB

english, 2013

8

Validity of the Michaelis-Menten equation - steady-state or reactant stationary assumption: that is the question

Schnell, Santiago

Journal:

Year:

2014

Language:

english

File:

PDF, 192 KB

english, 2014

9

Enzyme catalyzed reactions: From experiment to computational mechanism reconstruction

Jeyaraman Srividhya, Márcio A. Mourão, Edmund J. Crampin, Santiago Schnell

Journal:

Computational Biology and Chemistry

Year:

2010

Language:

english

File:

PDF, 562 KB

english, 2010

10

New approaches to modelling and analysis of biochemical reactions, pathways and networks

Edmund J Crampin, Santiago Schnell

Journal:

Progress in Biophysics and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 147 KB

english, 2004

11

Protein Interactions and Transition Times that Influence the Pathogenesis of Protein Folding Diseases

Schnell, Santiago

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 42 KB

english, 2014

12

Evidence for Residual and Partly Reparable Insulin Secretory Function and Maintained β-Cell Gene Expression in Islets From Patients With Type 1 Diabetes: Figure 1

Satin, Leslie S., Schnell, Santiago

Journal:

Year:

2015

Language:

english

File:

PDF, 798 KB

english, 2015

13

Designing nanoparticle treatment of autoimmunity with quantitative biology

Schnell, Santiago, Pietropaolo, Massimo

Journal:

Immunology & Cell Biology

Year:

2013

Language:

english

File:

PDF, 263 KB

english, 2013

14

Surveying the floodgates: estimating protein flux into the endoplasmic reticulum lumen in Saccharomyces cerevisiae

Vincent, Michael, Whidden, Mark, Schnell, Santiago

Journal:

Frontiers in Physiology

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

15

Quantitative proteome-based guidelines for intrinsic disorder characterization

Vincent, Michael, Whidden, Mark, Schnell, Santiago

Journal:

Biophysical Chemistry

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

16

Gonadotropin-releasing hormone (GnRH) neuron excitability is regulated by estradiol feedback and kisspeptin.

Adams, Caroline, Stroberg, Wylie, DeFazio, Richard A., Schnell, Santiago, Moenter, Suzanne M.

Journal:

Journal of Neuroscience

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

17

A Model of the Unfolded Protein Response: Pancreatic β-Cell as a Case Study

Schnell, Santiago

Journal:

Cellular Physiology and Biochemistry

Year:

2009

Language:

english

File:

PDF, 348 KB

english, 2009

18

Foreword

Schnell, Santiago

Journal:

Year:

2012

Language:

english

File:

PDF, 469 KB

english, 2012

19

A collection of intrinsic disorder characterizations from eukaryotic proteomes

Vincent, Michael, Schnell, Santiago

Journal:

Scientific Data

Year:

2016

Language:

english

File:

PDF, 316 KB

english, 2016

20

A mathematical basis for the clock and wavefront model for somitogenesis

Ruth E. Baker, Santiago Schnell, Philip K. Maini

Journal:

Developmental Biology

Year:

2007

Language:

english

File:

PDF, 66 KB

english, 2007

21

806 Notch Pathway Regulation of Intestinal Stem Cell Self-Renewal

Carulli, Alexis J., Keeley, Theresa M., Schnell, Santiago, Samuelson, Linda C.

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 112 KB

english, 2016

22

Estimation of the lag time in a subsequent monomer addition model for fibril elongation

Shoffner, Suzanne K., Schnell, Santiago

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 2.24 MB

english, 2016

23

Ten Simple Rules for a Computational Biologist’s Laboratory Notebook

Schnell, Santiago, Markel, Scott

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 159 KB

english, 2015

24

Why substrate depletion has apparent first-order kinetics in enzymatic digestion

J. Srividhya, Santiago Schnell

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 360 KB

english, 2006

25

Follow-the-leader cell migration requires biased cell–cell contact and local microenvironmental signals

Wynn, Michelle L, Rupp, Paul, Trainor, Paul A, Schnell, Santiago, Kulesa, Paul M

Journal:

Physical Biology

Year:

2013

Language:

english

File:

PDF, 1.10 MB

english, 2013

26

Inferring Intracellular Signal Transduction Circuitry from Molecular Perturbation Experiments

Wynn, Michelle L., Egbert, Megan, Consul, Nikita, Chang, Jungsoo, Wu, Zhi-Fen, Meravjer, Sofia D., Schnell, Santiago

Journal:

Bulletin of Mathematical Biology

Year:

2017

Language:

english

File:

PDF, 2.66 MB

english, 2017

27

An empirical analysis of enzyme function reporting for experimental reproducibility: Missing/incomplete information in published papers

Halling, Peter, Fitzpatrick, Paul F., Raushel, Frank M., Rohwer, Johann, Schnell, Santiago, Wittig, Ulrike, Wohlgemuth, Roland, Kettner, Carsten

Journal:

Biophysical Chemistry

Year:

2018

Language:

english

File:

PDF, 619 KB

english, 2018

28

Reconstructing biochemical pathways from time course data

Jeyaraman Srividhya, Edmund J. Crampin, Patrick E. McSharry, Santiago Schnell

Journal:

Year:

2007

Language:

english

File:

PDF, 521 KB

english, 2007

29

Expression of clock proteins in developing tooth

Li Zheng, Silvana Papagerakis, Santiago D. Schnell, Willemijntje A. Hoogerwerf, Petros Papagerakis

Journal:

Gene Expression Patterns

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

30

Modelling Terrestrial and Marine Foraging Habitats in Breeding Audouin's Gulls Larus audouinii: Timing Matters

Bécares, Juan, García-Tarrasón, Manuel, Villero, Dani, Bateman, Santiago, Jover, Lluís, García-Matarranz, Víctor, Sanpera, Carolina, Arcos, José Manuel, Schnell, Matthias Johannes

Journal:

Year:

2015

Language:

english

File:

PDF, 6.99 MB

english, 2015

31

Front Cover: On the Need to Develop Guidelines for Characterizing and Reporting Intrinsic Disorder in Proteins

Vincent, Michael, Uversky, Vladimir N., Schnell, Santiago

Journal:

Year:

2019

File:

PDF, 2.65 MB

2019

32

Expression of sodium channels with different saxitoxin affinity during rat forebrain development

Raimundo Villegas, Cecilia Castillo, Maria E. Póo, Santiago Schnell, Carolina Piernavieja, Domingo Balbi, Gloria M. Villegas

Journal:

Developmental Brain Research

Year:

1994

Language:

english

File:

PDF, 1.38 MB

english, 1994

33

Circadian rhythms regulate amelogenesis

Zheng, Li, Seon, Yoon Ji, Mourão, Marcio A., Schnell, Santiago, Kim, Doohak, Harada, Hidemitsu, Papagerakis, Silvana, Papagerakis, Petros

Journal:

Year:

2013

Language:

english

File:

PDF, 935 KB

english, 2013

34

WITHDRAWN: A mathematical basis for the clock and wavefront model for somitogenesis

Maini, Philip K., Baker, Ruth E., Schnell, Santiago

Journal:

Developmental Biology

Year:

2007

File:

PDF, 10 KB

2007

35

Coordination of signaling and tissue mechanics during morphogenesis of murine intestinal villi: a role for mitotic cell rounding

Freddo, Andrew M., Shoffner, Suzanne K., Shao, Yue, Taniguchi, Kenichiro, Grosse, Ann S., Guysinger, Margaux N., Wang, Sha, Rudraraju, Shiva, Margolis, Benjamin, Garikipati, Krishna, Schnell, Santiago

Journal:

Integrative Biology

Year:

2016

Language:

english

File:

PDF, 9.33 MB

english, 2016

36

Novel Hybrid Phenotype Revealed in Small Cell Lung Cancer by a Transcription Factor Network Model That Can Explain Tumor Heterogeneity

Udyavar, Akshata R., Wooten, David J., Hoeksema, Megan, Bansal, Mukesh, Califano, Andrea, Estrada, Lourdes, Schnell, Santiago, Irish, Jonathan M., Massion, Pierre P., Quaranta, Vito

Journal:

Cancer Research

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

37

Gene Expression Noise Enhances Robust Organization of the Early Mammalian Blastocyst

Holmes, William R., Reyes de Mochel, Nabora Soledad, Wang, Qixuan, Du, Huijing, Peng, Tao, Chiang, Michael, Cinquin, Olivier, Cho, Ken, Nie, Qing, Schnell, Santiago

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 4.11 MB

english, 2017

38

On the Need to Develop Guidelines for Characterizing and Reporting Intrinsic Disorder in Proteins

Vincent, Michael, Uversky, Vladimir N., Schnell, Santiago

Journal:

Year:

2019

Language:

english

File:

PDF, 972 KB

english, 2019

39

Do Cellular Condensates Accelerate Biochemical Reactions? Lessons from Microdroplet Chemistry

Stroberg, Wylie, Schnell, Santiago

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 479 KB

english, 2018

40

Bulletin of mathematical biology—facts, figures and comparisons

Philip K Maini, Santiago Schnell, Sara Jolliffe

Journal:

Bulletin of Mathematical Biology

Year:

2004

Language:

english

File:

PDF, 84 KB

english, 2004

41

Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map

Sourav Roy, Santiago Schnell, Predrag Radivojac

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 310 KB

english, 2006

42

Can tissue surface tension drive somite formation?

Ramon Grima, Santiago Schnell

Journal:

Developmental Biology

Year:

2007

Language:

english

File:

PDF, 610 KB

english, 2007

43

A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies

Benjamin Ribba, Thierry Colin, Santiago Schnell

Journal:

Theoretical Biology and Medical Modelling

Year:

2006

Language:

english

File:

PDF, 2.07 MB

english, 2006

44

A Mesoscopic Simulation Approach for Modeling Intracellular Reactions

Ramon Grima, Santiago Schnell

Journal:

Journal of Statistical Physics

Year:

2007

Language:

english

File:

PDF, 398 KB

english, 2007

45

Unraveling the contribution of pancreatic beta-cell suicide in autoimmune type 1 diabetes

Jaberi-Douraki, Majid, Schnell, Santiago, Pietropaolo, Massimo, Khadra, Anmar

Journal:

Journal of Theoretical Biology

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

46

A computational approach to studying ageing at the individual level

Harvanek, Zachary M., Mourão, Márcio A., Schnell, Santiago, Pletcher, Scott D.

Journal:

Proceedings Biological Sciences

Year:

2016

Language:

english

File:

PDF, 898 KB

english, 2016

47

Single-molecule enzymology à la Michaelis-Menten

Grima, Ramon, Walter, Nils G., Schnell, Santiago

Journal:

Year:

2014

Language:

english

File:

PDF, 328 KB

english, 2014

48

From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks

Paul M. Kulesa, Santiago Schnell, Stefan Rudloff, Ruth E. Baker, Philip K. Maini

Journal:

Developmental Dynamics

Year:

2007

Language:

english

File:

PDF, 442 KB

english, 2007

49

Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study

Shellman, Erin R., Chen, Yu, Lin, Xiaoxia, Burant, Charles F., Schnell, Santiago

Journal:

Computational Biology and Chemistry

Year:

2014

Language:

english

File:

PDF, 2.30 MB

english, 2014

50

Formation of Vertebral Precursors: Past Models and Future Predictions

Baker, Ruth E., Schnell, Santiago, Maini, Philip K.

Journal:

Journal of Theoretical Medicine

Year:

2003

Language:

english

File:

PDF, 232 KB

english, 2003

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